`mcpctl config claude --project X` writes user scope and never rewrites a
checkout's `.mcp.json`. The status line, however, preferred that file
unconditionally — so a legacy project-named entry an older mcpctl left behind
(`homeautomation` -> `mcpctl mcp -p homeautomation`) kept naming the old project
for good, and every switch looked like it had done nothing.
Reproduced live: with user scope on `sre`, `mcpctl statusline --directory
~/developer/michalzxc/claude/debug` printed `mcpctl:homeautomation` — a project
Claude Code also had in `disabledMcpServers` for that directory, so the line
named a server that was not even mounted.
Rank the sources by how deliberate each one is instead: a canonical `mcpctl`
pin, then user scope, then legacy residue, then the marker. A pin is a decision
and still wins; residue is not and no longer does. At every step, skip a server
Claude Code has switched off for that directory.
`config claude` now also warns when the working directory's `.mcp.json`
contradicts the switch, naming the file — the two scopes are merged rather than
chosen between, so nothing else would tell you.
Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_019wUmrfkVQR6CKcYKxENq7k