feat: add apply command for declarative config and interactive setup wizard

Apply reads YAML/JSON config files to sync servers, profiles, and projects
to the daemon with create-or-update semantics. Setup provides an interactive
wizard for configuring MCP servers with environment variables.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

src/cli/src/index.ts

@@ -6,6 +6,8 @@ import { createStatusCommand } from './commands/status.js';
 import { createGetCommand } from './commands/get.js';
 import { createDescribeCommand } from './commands/describe.js';
 import { createInstanceCommands } from './commands/instances.js';
+import { createApplyCommand } from './commands/apply.js';
+import { createSetupCommand } from './commands/setup.js';
 import { ApiClient } from './api-client.js';
 import { loadConfig } from './config/index.js';
 
@@ -52,6 +54,38 @@ export function createProgram(): Command {
     log: (...args) => console.log(...args),
   }));
 
+  program.addCommand(createApplyCommand({
+    client,
+    log: (...args) => console.log(...args),
+  }));
+
+  program.addCommand(createSetupCommand({
+    client,
+    prompt: {
+      async input(message) {
+        const { default: inquirer } = await import('inquirer');
+        const { answer } = await inquirer.prompt([{ type: 'input', name: 'answer', message }]);
+        return answer as string;
+      },
+      async password(message) {
+        const { default: inquirer } = await import('inquirer');
+        const { answer } = await inquirer.prompt([{ type: 'password', name: 'answer', message }]);
+        return answer as string;
+      },
+      async select(message, choices) {
+        const { default: inquirer } = await import('inquirer');
+        const { answer } = await inquirer.prompt([{ type: 'list', name: 'answer', message, choices }]);
+        return answer;
+      },
+      async confirm(message) {
+        const { default: inquirer } = await import('inquirer');
+        const { answer } = await inquirer.prompt([{ type: 'confirm', name: 'answer', message }]);
+        return answer as boolean;
+      },
+    },
+    log: (...args) => console.log(...args),
+  }));
+
   return program;
 }